IDSM ChemWebRDF

Operation / Service Description

Started at: 2024-03-28 01:29:24 UTC
Finished at: 2024-03-28 01:29:24 UTC

The endpoint provides Service Description.

Elapsed time2.036 [s]
RequestMethod
GET
URL
https://idsm.elixir-czech.cz/sparql/endpoint/idsm
Headers
User-Agent: Umaka-Crawler/1.0.0 by DBCLS (umakadata@dbcls.jp)
Accept: text/turtle, text/n3, application/n-triples, application/n-quads, application/rdf+xml, application/rdf+json, application/ld+json, application/trig, application/trix
Body
ResponseURL
https://idsm.elixir-czech.cz/sparql/endpoint/idsm
Status
200
Headers
Date: Thu, 28 Mar 2024 01:29:22 GMT
Server: Apache/2.4.57 (Debian)
Cache-Control: max-age=0, no-cache, no-store, must-revalidate
Pragma: no-cache
Expires: 0
Set-Cookie: JSESSIONID=85E4B170637FDC862A1E3C8BC53FC41D; Path=/sparql; Secure; HttpOnly
Access-Control-Allow-Headers: x-requested-with, Content-Type, origin, authorization, accept, client-security-token
Access-Control-Allow-Origin: *
Content-Type: text/turtle;charset=UTF-8
Keep-Alive: timeout=5, max=99
Connection: Keep-Alive
Transfer-Encoding: chunked
Body
@prefix idsm: <https://idsm.elixir-czech.cz/sparql/endpoint/> .
@prefix ms: <http://bioinfo.uochb.cas.cz/rdf/v1.0/ms#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix format: <http://www.w3.org/ns/formats/> .
@prefix ent: <http://www.w3.org/ns/entailment/> .
@prefix descriptor: <http://rdf.ncbi.nlm.nih.gov/pubchem/descriptor/> .
@prefix ebi: <http://rdf.ebi.ac.uk/dataset/> .
@prefix sd: <http://www.w3.org/ns/sparql-service-description#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix fulltext: <http://bioinfo.uochb.cas.cz/rdf/v1.0/fulltext#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix sachem: <http://bioinfo.uochb.cas.cz/rdf/v1.0/sachem#> .
@prefix dataset: <http://bioinfo.iocb.cz/dataset/> .
@prefix pubchem: <http://rdf.ncbi.nlm.nih.gov/pubchem/> .
@prefix mesh: <http://id.nlm.nih.gov/mesh/> .

<https://idsm.elixir-czech.cz/sparql/endpoint/idsm#DefaultDataset> dcterms:issued "2024-03-27T02:00:59Z"^^xsd:dateTime;
	rdf:type sd:Dataset;
	sd:defaultGraph <https://idsm.elixir-czech.cz/sparql/endpoint/idsm#DefaultGraph>;
	sd:namedGraph <https://idsm.elixir-czech.cz/sparql/endpoint/idsm#ServiceDescription>,
		pubchem:author,
		dataset:ontology,
		pubchem:inchikey,
		descriptor:substance,
		pubchem:cooccurrence,
		pubchem:measuregroup,
		pubchem:grant,
		pubchem:organization,
		mesh:heading,
		pubchem:pathway,
		descriptor:compound,
		pubchem:source,
		pubchem:anatomy,
		<http://bioinfo.uochb.cas.cz/rdf/isdb/>,
		pubchem:patent,
		pubchem:disease,
		pubchem:bioassay,
		<http://www.wikidata.org/entity/>,
		pubchem:substance,
		ebi:chembl,
		pubchem:endpoint,
		pubchem:conserveddomain,
		pubchem:reference,
		pubchem:book,
		<http://wifo5-04.informatik.uni-mannheim.de/drugbank/resource/drugs/>,
		pubchem:protein,
		pubchem:cell,
		pubchem:synonym,
		pubchem:compound,
		ebi:chebi,
		pubchem:concept,
		pubchem:gene,
		pubchem:journal,
		pubchem:taxonomy,
		<https://idsm.elixir-czech.cz/rdf/mona/> .
<https://idsm.elixir-czech.cz/sparql/endpoint/idsm#DefaultGraph> dcterms:issued "2024-03-27T02:00:59Z"^^xsd:dateTime;
	rdf:type sd:Graph .
idsm:idsm rdf:type sd:Service;
	sd:endpoint idsm:idsm;
	sd:feature sd:BasicFederatedQuery,
		sd:EmptyGraphs,
		sd:UnionDefaultGraph;
	sd:defaultEntailmentRegime ent:Simple;
	sd:supportedLanguage sd:SPARQL11Query;
	sd:resultFormat format:SPARQL_Results_XML,
		format:SPARQL_Results_JSON,
		format:SPARQL_Results_CSV,
		format:SPARQL_Results_TSV,
		format:RDF_JSON,
		format:RDF_XML,
		format:Turtle,
		format:TriG,
		<http://www.w3.org/ns/formats/N-Triples>,
		<http://www.w3.org/ns/formats/N-Quads>;
	sd:extensionFunction ms:cosineHungarian,
		sachem:similarity,
		ms:modifiedCosine,
		fulltext:match,
		ms:cosineGreedy,
		ms:normalize;
	sd:propertyFeature sachem:similaritySearch,
		sachem:exactSearch,
		sachem:substructureSearch,
		fulltext:bioassaySearch,
		sachem:scoredSubstructureSearch,
		sachem:similarCompoundSearch,
		fulltext:compoundSearch;
	sd:defaultDataset <https://idsm.elixir-czech.cz/sparql/endpoint/idsm#DefaultDataset> .
ms:cosineHungarian rdf:type sd:Function .
sachem:similarity rdf:type sd:Function .
ms:modifiedCosine rdf:type sd:Function .
fulltext:match rdf:type sd:Function .
ms:cosineGreedy rdf:type sd:Function .
ms:normalize rdf:type sd:Function .
sachem:similaritySearch rdf:type sd:Feature .
sachem:exactSearch rdf:type sd:Feature .
sachem:substructureSearch rdf:type sd:Feature .
fulltext:bioassaySearch rdf:type sd:Feature .
sachem:scoredSubstructureSearch rdf:type sd:Feature .
sachem:similarCompoundSearch rdf:type sd:Feature .
fulltext:compoundSearch rdf:type sd:Feature .
<https://idsm.elixir-czech.cz/sparql/endpoint/idsm#ServiceDescription> rdf:type sd:NamedGraph;
	rdf:name <https://idsm.elixir-czech.cz/sparql/endpoint/idsm#ServiceDescription>;
	sd:entailmentRegime ent:Simple;
	sd:graph <https://idsm.elixir-czech.cz/sparql/endpoint/idsm#ServiceDescriptionGraph> .
<https://idsm.elixir-czech.cz/sparql/endpoint/idsm#ServiceDescriptionGraph> rdf:type sd:Graph .
pubchem:author rdf:type sd:NamedGraph;
	rdf:name pubchem:author;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/author#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/author#Graph> rdf:type sd:Graph .
dataset:ontology rdf:type sd:NamedGraph;
	rdf:name dataset:ontology;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://bioinfo.iocb.cz/dataset/ontology#Graph> .
<http://bioinfo.iocb.cz/dataset/ontology#Graph> rdf:type sd:Graph .
pubchem:inchikey rdf:type sd:NamedGraph;
	rdf:name pubchem:inchikey;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/inchikey#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/inchikey#Graph> rdf:type sd:Graph .
descriptor:substance rdf:type sd:NamedGraph;
	rdf:name descriptor:substance;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/descriptor/substance#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/descriptor/substance#Graph> rdf:type sd:Graph .
pubchem:cooccurrence rdf:type sd:NamedGraph;
	rdf:name pubchem:cooccurrence;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/cooccurrence#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/cooccurrence#Graph> rdf:type sd:Graph .
pubchem:measuregroup rdf:type sd:NamedGraph;
	rdf:name pubchem:measuregroup;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/measuregroup#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/measuregroup#Graph> rdf:type sd:Graph .
pubchem:grant rdf:type sd:NamedGraph;
	rdf:name pubchem:grant;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/grant#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/grant#Graph> rdf:type sd:Graph .
pubchem:organization rdf:type sd:NamedGraph;
	rdf:name pubchem:organization;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/organization#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/organization#Graph> rdf:type sd:Graph .
mesh:heading rdf:type sd:NamedGraph;
	rdf:name mesh:heading;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://id.nlm.nih.gov/mesh/heading#Graph> .
<http://id.nlm.nih.gov/mesh/heading#Graph> rdf:type sd:Graph .
pubchem:pathway rdf:type sd:NamedGraph;
	rdf:name pubchem:pathway;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/pathway#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/pathway#Graph> rdf:type sd:Graph .
descriptor:compound rdf:type sd:NamedGraph;
	rdf:name descriptor:compound;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/descriptor/compound#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/descriptor/compound#Graph> rdf:type sd:Graph .
pubchem:source rdf:type sd:NamedGraph;
	rdf:name pubchem:source;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/source#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/source#Graph> rdf:type sd:Graph .
pubchem:anatomy rdf:type sd:NamedGraph;
	rdf:name pubchem:anatomy;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/anatomy#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/anatomy#Graph> rdf:type sd:Graph .
<http://bioinfo.uochb.cas.cz/rdf/isdb/> rdf:type sd:NamedGraph;
	rdf:name <http://bioinfo.uochb.cas.cz/rdf/isdb/>;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://bioinfo.uochb.cas.cz/rdf/isdb/#Graph> .
<http://bioinfo.uochb.cas.cz/rdf/isdb/#Graph> rdf:type sd:Graph .
pubchem:patent rdf:type sd:NamedGraph;
	rdf:name pubchem:patent;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/patent#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/patent#Graph> rdf:type sd:Graph .
pubchem:disease rdf:type sd:NamedGraph;
	rdf:name pubchem:disease;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/disease#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/disease#Graph> rdf:type sd:Graph .
pubchem:bioassay rdf:type sd:NamedGraph;
	rdf:name pubchem:bioassay;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/bioassay#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/bioassay#Graph> rdf:type sd:Graph .
<http://www.wikidata.org/entity/> rdf:type sd:NamedGraph;
	rdf:name <http://www.wikidata.org/entity/>;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://www.wikidata.org/entity/#Graph> .
<http://www.wikidata.org/entity/#Graph> rdf:type sd:Graph .
pubchem:substance rdf:type sd:NamedGraph;
	rdf:name pubchem:substance;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/substance#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/substance#Graph> rdf:type sd:Graph .
ebi:chembl rdf:type sd:NamedGraph;
	rdf:name ebi:chembl;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ebi.ac.uk/dataset/chembl#Graph> .
<http://rdf.ebi.ac.uk/dataset/chembl#Graph> rdf:type sd:Graph .
pubchem:endpoint rdf:type sd:NamedGraph;
	rdf:name pubchem:endpoint;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/endpoint#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/endpoint#Graph> rdf:type sd:Graph .
pubchem:conserveddomain rdf:type sd:NamedGraph;
	rdf:name pubchem:conserveddomain;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/conserveddomain#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/conserveddomain#Graph> rdf:type sd:Graph .
pubchem:reference rdf:type sd:NamedGraph;
	rdf:name pubchem:reference;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/reference#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/reference#Graph> rdf:type sd:Graph .
pubchem:book rdf:type sd:NamedGraph;
	rdf:name pubchem:book;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://rdf.ncbi.nlm.nih.gov/pubchem/book#Graph> .
<http://rdf.ncbi.nlm.nih.gov/pubchem/book#Graph> rdf:type sd:Graph .
<http://wifo5-04.informatik.uni-mannheim.de/drugbank/resource/drugs/> rdf:type sd:NamedGraph;
	rdf:name <http://wifo5-04.informatik.uni-mannheim.de/drugbank/resource/drugs/>;
	sd:entailmentRegime ent:Simple;
	sd:graph <http://wifo5-04.informatik.uni-mannheim.de/drugbank/resource/drugs/#Graph> .
<http://wifo5-04.informatik.uni-mannheim.de/drugbank/resource/drugs/#Graph> rdf:type…
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